Transcript 8507 | MetamORF

Transcript

ID CARD

MetamORF ID

8507

ENSMUST00000154859

Name

Tmbim1-208

Strand

Biotype

processed_transcript

Start-end positions

74293562-74304215

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:69660

Aliases

2310061B02Rik,
AA960455, AU024746, C78899,
ENSMUSG00000006301, MGI:1916910, mKIAA4161,
NCBI:69660, OFF:Tmbim1, RECS1,
Tmbib1, Tmbim1

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
13847	39	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
8506	51	CTG ...	LEN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Skin_tumor
617573	87	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
131177	249	CTG ...	LPG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, NSC
682885	183	GTG ...	VPH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
648116	96	ATG ...	MTI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC
391501	48	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
327945	45	CTG ...	LAT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
655690	168	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC
381032	63	CTG ...	LVT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
680313	108	CTG ...	LSC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
719277	126	GTG ...	VAT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
661724	144	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	BMDC
357117	78	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
655079	96	GTG ...	VVI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
734035	129	CTG ...	LVA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
129567	297	CTG ...	LYP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, NSC
678223	66	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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