Transcript 8460 | MetamORF

Transcript

ID CARD

MetamORF ID

8460

ENSMUST00000135197

Name

Gm21972-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

86133637-86162788

CDS Start-stop positions

-86137109

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

Gm21972

Aliases

Gm21972

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
938205	33	ATA ...	IIQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
1004355	105	CTG ...	LLD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	Brain, MEF, Neutrophil, NSC
939957	36	AAG ...	KYD ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
936111	183	AAG ...	KSK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
934361	102	TTG ...	LDN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	BMDC, Brain, MEF, Neutrophil, NSC
950390	147	ATA ...	ISM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	BMDC
768595	69	CTG ...	LKV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF, Neutrophil, NSC
786116	90	GTG ...	VEP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF, Neutrophil, NSC
1531807	30	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
12944	123	CTG ...	LKD ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF, Neutrophil, NSC, Skin_tumor
1347494	99	ATG ...	MKQ ...	Ribo-seq	ATG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC
948081	66	ACG ...	TSY ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	NMD sORF	BMDC
8459	69	CTG ...	LFP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	MEF, Skin_tumor
785302	81	GTG ...	VAA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF, Neutrophil, NSC
964267	231	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
907436	240	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
949928	141	ATG ...	MTK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	BMDC
857395	57	CTG ...	LNQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	NMD sORF	Brain, MEF, Neutrophil, NSC

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