Transcript 84189 | MetamORF

Transcript

ID CARD

MetamORF ID

84189

ENSMUST00000214527

Name

Lta4h-202

Strand

Biotype

retained_intron

Start-end positions

93474235-93483001

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:16993

Aliases

ENSMUSG00000015889,
Lta4h, MGI:96836, NCBI:16993,
OFF:Lta4h

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
609315	30	ATG ...	MLR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
1074122	78	CTG ...	LTN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1066588	84	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1068067	111	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1065192	150	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, v6-5
1514625	45	ATG ...	MPL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1028307	90	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
611272	87	GTG ...	VMF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, v6-5
507713	39	TTG ...	LHC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
84188	87	CTG ...	LKD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Testis
1074850	39	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
560257	84	ATG ...	MFI ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil
1059946	105	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1516368	30	CTG ...	LKY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	NSC
1313846	30	CTG ...	LEE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
512449	33	ATG ...	MSS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Neutrophil, Spleen_B_cell

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