Transcript 8403 | MetamORF

Transcript

ID CARD

MetamORF ID

8403

ENSMUST00000041589

Name

Tob1-201

Strand

Biotype

protein_coding

Start-end positions

94211454-94215495

CDS Start-stop positions

94213640-94214728

CDS Relative positions

433-1521

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:22057

Aliases

ENSMUSG00000037573,
MGI:1349721, NCBI:22057, OFF:Tob1,
Tob, Tob1, Trob

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
889127	54	ATG ...	MPL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
309934	36	TTG ...	LTM ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF
887895	33	TTG ...	LLP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
9095	75	ATG ...	MKG ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Skin_tumor, v6-5
9150	108	GTG ...	VKS ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Skin_tumor
888941	45	ATG ...	MCL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
303947	30	ATG ...	MFV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
8906	72	ATG ...	MYT ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC, Skin_tumor, v6-5
991735	30	ATG ...	MRI ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	sORF Upstream	E14, Glioma, Liver, MEF, MESC, R1E
306993	75	GTG ...	VKP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
303017	99	TTG ...	LKD ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, NSC
641875	57	GTG ...	VSG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
646971	30	CTG ...	LCR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, MEF
647075	33	TTG ...	LKD ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, Liver, MEF, v6-5
644959	30	CTG ...	LPP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
889189	174	CTG ...	LLF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
888968	93	GTG ...	VTA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
300292	48	GTG ...	VVW ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, v6-5
888635	159	ATG ...	MPR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC
1126405	57	CTG ...	LIF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
889647	48	TTG ...	LMC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
651485	39	TTG ...	LRF ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1126561	87	TTG ...	LNE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
1289221	42	ACG ...	TGR ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
8402	111	TTG ...	LVK ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, NSC, Skin_tumor, v6-5
20894	108	ATG ...	MEC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Testis
304999	123	GTG ...	VST ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, NSC, v6-5
299809	57	CTG ...	LKS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
649972	36	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF
1288829	33	ATT ...	IFL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
890797	42	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
293854	63	GTG ...	VSW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver

Export data