Transcript 840045

Transcript

ID CARD

MetamORF ID

840045

ENSMUST00000206906

Name

Arhgef1-219

Strand

Biotype

protein_coding

Start-end positions

24904356-24913451

CDS Start-stop positions

24907734-

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:16801

Aliases

Arhgef1,
ENSMUSG00000040940, Lbcl2, Lsc,
MGI:1353510, NCBI:16801, OFF:Arhgef1

Chr 7

ORFs

6 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
840044	33	ATG ...	MRI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, BMDC
842917	66	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
845640	90	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
842370	48	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
594024	42	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
845338	57	ATG ...	MRI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, BMDC

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