Transcript 829331

Transcript

ID CARD

MetamORF ID

829331

ENSMUST00000197682

Name

Diablo-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

123512082-123525429

CDS Start-stop positions

123523323-123524120

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:66593

Aliases

0610041G12Rik,
1700006L01Rik, AU040403, Diablo,
ENSMUSG00000029433, MGI:1913843, NCBI:66593,
OFF:Diablo, Smac

Chr 5

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
65204	153	GTG ...	VKS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, v6-5
63726	93	ATG ...	MAQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
522298	42	CTG ...	LSW ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	CDS NMD sORF	B_cell, E14, MEF, v6-5
65571	132	GTG ...	VSL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14
1662833	48	TTG ...	LGD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
66069	132	GTG ...	VRQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, v6-5
66133	147	TTG ...	LMR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14
65816	87	GTG ...	VFV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
66211	30	TTG ...	LKQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
64445	126	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14
65543	48	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
66125	117	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
65636	39	TTG ...	LDD ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
64505	69	ATG ...	MFP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	CDS NMD sORF	B_cell, E14, v6-5
63574	75	CTG ...	LHQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
61564	156	TTG ...	LVK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, v6-5
1088668	30	GTG ...	VAG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
64246	81	TTG ...	LKL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, v6-5
63289	99	TTG ...	LAE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, v6-5
62169	54	GTG ...	VSD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
64153	75	TTG ...	LET ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, v6-5

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