Transcript 8211 | MetamORF

Transcript

ID CARD

MetamORF ID

8211

ENSMUST00000058438

Name

Dcaf7-201

Strand

Biotype

protein_coding

Start-end positions

106036872-106059324

CDS Start-stop positions

106037124-106054855

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:71833

Aliases

1700012F10Rik,
2610037L01Rik, C86529, Dcaf7,
ENSMUSG00000049354, HAN11, MGI:1919083,
NCBI:71833, OFF:Dcaf7, Wdr68

Chr 11

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1529189	105	GTG ...	VSM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
318670	102	CTG ...	LTQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
91596	144	ATG ...	MRR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain
301576	33	TTG ...	LKL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
23450	135	TTG ...	LTS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell, Testis
23738	177	ATG ...	MRR ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
319797	63	ATG ...	MCQ ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
451700	33	GTG ...	VCV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
301300	36	TTG ...	LVK ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, v6-5
307716	57	GTG ...	VLA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF
317629	141	TTG ...	LTT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Neutrophil, NSC, R1E, Spleen_B_cell
22173	117	GTG ...	VPQ ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Liver, MEF
309118	33	CTG ...	LER ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain
17873	90	GTG ...	VHH ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
298995	69	CTG ...	LTQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain
300707	42	CTG ...	LGP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
640693	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain
18697	96	ATG ...	MKT ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell, Testis
293747	78	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Liver
308452	108	TTG ...	LTT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain
1291094	111	ATA ...	IAP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1294254	114	ATA ...	IAP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
297693	30	TTG ...	LPL ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell, v6-5
8210	30	ATG ...	MKR ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Skin_tumor
310854	33	TTG ...	LTG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
17340	132	TTG ...	LTS ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell, Testis
308618	60	CTG ...	LRP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Liver, MEF
306604	36	ATG ...	MFE ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
318634	45	CTG ...	LER ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
300472	60	CTG ...	LGH ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell
309690	60	ATG ...	MCQ ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell
306384	30	GTG ...	VVT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
18428	93	TTG ...	LCP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain
935175	93	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
21193	51	CTG ...	LEG ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell, Testis
313991	45	CTG ...	LGP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC, R1E, Spleen_B_cell
308404	48	GTG ...	VSV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain
299541	30	TTG ...	LTQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
297479	33	GTG ...	VKQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver
8563	81	CTG ...	LGT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Skin_tumor
22998	63	GTG ...	VVT ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
22702	99	ATG ...	MKT ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
19470	72	ATG ...	MTS ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell, Testis
90813	96	CTG ...	LAG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, MEF

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