Transcript 816903

Transcript

ID CARD

MetamORF ID

816903

ENSMUST00000125274

Name

Clcc1-205

Strand

Biotype

processed_transcript

Start-end positions

108653949-108662995

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:229725

Aliases

Clcc1,
ENSMUSG00000027884, Mclc, MGI:2385186,
NCBI:229725, OFF:Clcc1

Chr 3

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
130068	63	ATG ...	MMT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
138942	48	TTG ...	LTQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
506153	30	CTG ...	LKE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1647338	69	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
129888	78	GTG ...	VSP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
820426	60	ATG ...	MFR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
505165	84	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
138602	33	ATG ...	MSV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
503495	45	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
133624	60	ATG ...	MTT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, MEF
134396	69	ATG ...	MLM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
819591	108	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell

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