Transcript 811457

Transcript

ID CARD

MetamORF ID

811457

ENSMUST00000114512

Name

Gls-203

Strand

Biotype

protein_coding

Start-end positions

52165941-52232296

CDS Start-stop positions

52166158-52219558

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:14660

Aliases

6330442B14,
AI314027, B230365M23Rik, ENSMUSG00000026103,
Gls, MGI:95752, NCBI:14660,
OFF:Gls

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
940156	57	AAG ...	KIN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
353875	72	ATG ...	MQL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
699801	45	ATG ...	MSY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1190178	66	ATT ...	ICC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF Upstream	E14
1220450	93	ATA ...	IQL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF Upstream	E14
151405	87	TTG ...	LQK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, R1E
943692	78	ATA ...	IRW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
967020	87	ATA ...	IRW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
141031	111	ATG ...	MSY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
145211	66	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
356464	39	ATG ...	MYI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
120903	63	TTG ...	LDS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
127099	51	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1226361	105	ATT ...	ICC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF Upstream	E14
127763	66	ATG ...	MLD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
803242	123	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
146735	72	ATG ...	MNM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
155346	36	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
295445	48	TTG ...	LQK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1197961	111	AGG ...	RHR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
359547	63	CTG ...	LLM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1194376	54	ATA ...	IQL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF Upstream	E14

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