Transcript 807589

Transcript

ID CARD

MetamORF ID

807589

ENSMUST00000140713

Name

Raly-207

Strand

Biotype

protein_coding

Start-end positions

154791352-154864049

CDS Start-stop positions

154857278-

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:19383

Aliases

AI663842,
ENSMUSG00000027593, Merc, MGI:97850,
NCBI:19383, OFF:Raly, Raly

Chr 2

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
46080	60	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	R1E
47287	135	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, R1E
45614	126	CTG ...	LCT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, R1E
43969	81	ATG ...	MPG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, R1E
964486	198	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	BMDC
499417	36	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
49101	90	ATG ...	MSA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, R1E
47170	96	ATG ...	MPM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, R1E
46242	111	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, R1E
499557	69	CTG ...	LCW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, R1E
816136	165	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	B_cell
48756	90	GTG ...	VSK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	B_cell, R1E
811198	54	ATG ...	MGG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, R1E
48220	171	ATG ...	MWR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, R1E
48389	105	TTG ...	LSS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	B_cell, R1E
49218	72	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, R1E
97441	45	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, R1E
964174	261	GTG ...	VCS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	BMDC
967236	198	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	BMDC
45303	114	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	B_cell, R1E

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