Transcript 8053 | MetamORF

Transcript

ID CARD

MetamORF ID

8053

ENSMUST00000154635

Name

Ftsj3-206

Strand

Biotype

retained_intron

Start-end positions

106251009-106252554

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:56095

Aliases

AA537063,
AU045295, C79843, D11Ertd400e,
ENSMUSG00000020706, Epcs3, Ftsj3,
MGI:1860295, NCBI:56095, OFF:Ftsj3

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8052	93	ATG ...	MCQ ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Skin_tumor, v6-5
8579	126	CTG ...	LPR ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Testis, v6-5
8823	117	CTG ...	LIC ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Skin_tumor, v6-5
773728	72	CTG ...	LGF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, v6-5
1843340	183	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
8252	69	ATG ...	MIL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Skin_tumor
1339809	45	CTG ...	LAE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E
8482	81	CTG ...	LRT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Skin_tumor, v6-5
769338	45	CTG ...	LAG ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, v6-5
307968	60	CTG ...	LDP ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, R1E, v6-5
9048	105	GTG ...	VSD ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Testis, v6-5
769474	60	TTG ...	LQM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, v6-5
8892	84	ATG ...	MLR ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Skin_tumor, v6-5
8996	102	ATG ...	MTS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Skin_tumor, v6-5
8363	72	ATG ...	MMI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Skin_tumor, v6-5
453118	135	CTG ...	LQT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, v6-5
772389	54	ATG ...	MRG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
8349	72	CTG ...	LES ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, R1E, Skin_tumor, Testis, v6-5
8170	51	GTG ...	VTW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E
8275	135	CTG ...	LSD ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
1122652	75	CTG ...	LRQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5

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