Transcript 80335 | MetamORF

Transcript

ID CARD

MetamORF ID

80335

ENSMUST00000169311

Name

Nob1-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

107412486-107425041

CDS Start-stop positions

107416170-107425028

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:67619

Aliases

1700021I09Rik,
ART-4, ENSMUSG00000003848, MGI:1914869,
NCBI:67619, Nob1, Nob1p,
OFF:Nob1, Psmd8bp1

Chr 8

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
240333	45	ATG ...	MGP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
80334	195	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell, Testis
755630	147	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
428178	30	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
249209	111	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
428662	156	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
248904	126	CTG ...	LKK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Spleen_B_cell
241662	87	CTG ...	LQV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
82257	222	CTG ...	LTE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell, Testis
246194	156	GTG ...	VFC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Liver, Spleen_B_cell
608135	63	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
427727	36	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
245396	117	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Spleen_B_cell
430949	54	GTG ...	VDN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
247256	108	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, Spleen_B_cell
430649	93	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
235928	69	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
244725	96	TTG ...	LEQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
430021	60	CTG ...	LPY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, Spleen_B_cell
237395	159	GTG ...	VFA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
235810	105	GTG ...	VRE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, Spleen_B_cell
247824	36	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
236130	66	TTG ...	LGA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
428818	90	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
431197	45	TTG ...	LWE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	Spleen_B_cell
430682	54	CTG ...	LWT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	Spleen_B_cell

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