Transcript 7974 | MetamORF

Transcript

ID CARD

MetamORF ID

7974

ENSMUST00000067664

Name

Ywhae-201

Strand

Biotype

protein_coding

Start-end positions

75732869-75765845

CDS Start-stop positions

75733028-75764672

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:22627

Aliases

AU019196,
ENSMUSG00000020849, MGI:894689, NCBI:22627,
OFF:Ywhae, Ywhae

Chr 11

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
419324	210	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
934552	30	AAG ...	KKT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
23767	69	ATG ...	MYW ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, Testis
20884	42	ATG ...	MKF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Testis
91560	84	CTG ...	LSL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Testis
20309	69	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Testis
932144	39	AAG ...	KNE ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
17392	144	GTG ...	VTF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Testis
933127	36	AGG ...	RMW ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
18657	66	ATG ...	MTG ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Testis
20151	132	ATG ...	MYW ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Testis
9474	111	TTG ...	LLS ...	Ribo-seq	TTG		24	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
91367	117	TTG ...	LRR ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Testis
650870	30	TTG ...	LEP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
9367	84	ATG ...	MKF ...	Ribo-seq	ATG		23	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
8476	30	ATG ...	MTQ ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, Skin_tumor, Testis
936202	54	AGG ...	RQQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
19401	78	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Testis
936124	45	ATC ...	INE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1286519	45	AAG ...	KRC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
317136	33	CTG ...	LAS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
930173	42	AGG ...	RTL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
932857	33	AAG ...	KSI ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
933831	60	AAG ...	KSR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
8202	33	ATG ...	MWK ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
418907	225	AGG ...	RIW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
23426	81	GTG ...	VTF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, Testis
19441	42	TTG ...	LKN ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, Testis
651813	147	TTG ...	LSA ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
419328	234	ATG ...	MIG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
17670	42	TTG ...	LNR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Testis
8337	33	TTG ...	LMT ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Skin_tumor, Testis
9101	57	GTG ...	VKK ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Skin_tumor, Testis
935579	54	ATC ...	IRF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
931894	192	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
935485	42	AAG ...	KQL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
932405	30	ATT ...	IPP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1837903	42	ATG ...	MEL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream sORF	R1E
418846	51	ATA ...	IKK ...	Ribo-seq	ATA	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, C2C12, E14
7973	63	GTG ...	VKS ...	Ribo-seq	GTG	moderate	16	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
936673	72	ATT ...	IPP ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14

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