Transcript 795864

Transcript

ID CARD

MetamORF ID

795864

ENSMUST00000165139

Name

H2-Aa-202

Strand

Biotype

retained_intron

Start-end positions

34283772-34287777

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:14960

Aliases

Aalpha,
ENSMUSG00000036594, H-2Aa, H2-Aa,
H2Aa, I-Aalpha, Ia-1,
Ia1, IAalpha, MGI:95895,
NCBI:14960, OFF:H2-Aa

Chr 17

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
480947	105	ATG ...	MSC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
796659	84	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
480712	114	TTG ...	LMV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
798781	78	CTG ...	LGV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
795863	69	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
481277	111	ATG ...	MVM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
480066	159	GTG ...	VYI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
796310	48	TTG ...	LAN ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
482685	144	CTG ...	LET ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
481769	135	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
482062	120	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
798219	63	CTG ...	LTT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
478437	108	GTG ...	VMS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
797638	54	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
481895	93	ATG ...	MWT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell

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