Transcript 795759

Transcript

ID CARD

MetamORF ID

795759

ENSMUST00000179928

Name

Hcfc1r1-202

Strand

Biotype

protein_coding

Start-end positions

23673627-23675174

CDS Start-stop positions

23673983-23675019

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:353502

Aliases

ENSMUSG00000023904,
Hcfc1r1, HPIP, MGI:2663619,
NCBI:353502, OFF:Hcfc1r1

Chr 17

ORFs

5 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
385111	126	ATG ...	MVA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF Upstream	B_cell
36324	123	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
387095	90	CTG ...	LPV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, R1E
388878	105	ATG ...	MAC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
385758	129	CTG ...	LMV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell

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