Transcript 792206

Transcript

ID CARD

MetamORF ID

792206

ENSMUST00000185827

Name

Ndufs1-206

Strand

Biotype

retained_intron

Start-end positions

63156683-63176669

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:227197

Aliases

5830412M15Rik,
9930026A05Rik, ENSMUSG00000025968, MGI:2443241,
NCBI:227197, Ndufs1, OFF:Ndufs1

Chr 1

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
992967	60	TTG ...	LIG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
371026	51	TTG ...	LMV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
99917	48	ATG ...	MVS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
95132	45	ATG ...	MKG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
777447	30	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
727631	108	ATG ...	MIW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
771959	87	TTG ...	LIE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
949319	99	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
11641	102	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
955799	81	AGG ...	RIP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1124411	69	TTG ...	LLN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
1114126	105	TTG ...	LVD ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
348496	63	TTG ...	LKY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
788328	51	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
763060	78	GTG ...	VED ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, v6-5
605605	81	ATG ...	MTC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
668916	117	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
183842	54	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1152071	102	GTG ...	VDA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
1131313	108	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
893724	123	GTG ...	VVF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
563995	177	TTG ...	LGT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
459504	30	TTG ...	LLE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1451272	105	GTG ...	VME ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1159390	78	CTG ...	LKD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
854558	99	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
450147	33	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1140594	45	TTG ...	LRE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
792205	126	GTG ...	VAA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, v6-5
950942	93	ATT ...	IDI ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
12807	66	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5

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