Transcript 78472 | MetamORF

Transcript

ID CARD

MetamORF ID

78472

ENSMUST00000210680

Name

Cpe-202

Strand

Biotype

processed_transcript

Start-end positions

64609191-64620485

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:12876

Aliases

Cpe,
CPH, Cph-1, Cph1,
ENSMUSG00000037852, fat, MGI:101932,
NCBI:12876, NF-alpha1, OFF:Cpe,
R74677

Chr 8

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
82176	237	CTG ...	LKD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
80109	42	GTG ...	VAN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Testis
81642	192	CTG ...	LLI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
80048	60	CTG ...	LHG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Testis
608571	63	CTG ...	LDH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
80896	126	CTG ...	LIH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
81847	168	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
80464	150	CTG ...	LSF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
79459	90	TTG ...	LNP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
82274	222	GTG ...	VGR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
78471	159	GTG ...	VYV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
79873	78	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
82128	171	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
79823	81	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
81935	90	GTG ...	VVF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1567521	48	GTG ...	VNS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
79772	168	CTG ...	LCN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
81104	93	GTG ...	VVV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
79363	180	TTG ...	LAQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
82202	75	GTG ...	VLS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
81754	120	TTG ...	LCF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
79953	192	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis

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