Transcript 776491

Transcript

ID CARD

MetamORF ID

776491

ENSMUST00000189841

Name

Trip12-213

Strand

Biotype

nonsense_mediated_decay

Start-end positions

84744728-84754404

CDS Start-stop positions

84747208-

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:14897

Aliases

1110036I07Rik,
6720416K24Rik, AA410158, ENSMUSG00000026219,
Gtl6, MGI:1309481, NCBI:14897,
OFF:Trip12, TRIP-12, Trip12

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
790544	48	TTG ...	LQH ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	B_cell, Neutrophil, v6-5
776490	129	TTG ...	LNP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, v6-5
829376	138	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, v6-5
928923	39	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
783649	36	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	B_cell
1048575	114	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
575395	66	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
1045627	63	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Neutrophil, v6-5
1151815	126	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
300315	84	GTG ...	VMF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1157990	201	GTG ...	VDG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
298239	81	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
663382	69	ATG ...	MSV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF

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