Transcript 77329 | MetamORF

Transcript

ID CARD

MetamORF ID

77329

ENSMUST00000106000

Name

Cd151-202

Strand

Biotype

protein_coding

Start-end positions

141467393-141471473

CDS Start-stop positions

141469262-141470697

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:12476

Aliases

Cd151,
ENSMUSG00000025510, MGI:1096360, NCBI:12476,
OFF:Cd151, PETA-3, SFA-1,
Tspan24

Chr 7

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
229729	135	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
77737	135	CTG ...	LVF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, R1E, Testis
77524	147	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
598775	102	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	3T3, MEF
4018	78	CTG ...	LSW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
987862	57	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
77328	132	GTG ...	VFL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, R1E, Testis
600190	87	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	3T3, MEF
212411	39	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
4727	144	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
223970	36	CTG ...	LVA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
597740	39	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	BMDC
595398	54	GTG ...	VIA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, BMDC
77946	114	CTG ...	LAS ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Testis
78054	141	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
77552	171	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
595539	33	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
77093	162	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
77807	126	ATG ...	MPP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
76870	39	GTG ...	VTT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
216558	84	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
987636	75	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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