Transcript 76989 | MetamORF

Transcript

ID CARD

MetamORF ID

76989

ENSMUST00000156525

Name

Lig1-209

Strand

Biotype

processed_transcript

Start-end positions

13278865-13311426

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:16881

Aliases

AL033288,
ENSMUSG00000056394, Lig1, LigI,
MGI:101789, NCBI:16881, OFF:Lig1

Chr 7

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1817635	51	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
1253492	33	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1814553	111	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1813592	183	TTG ...	LSN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1815092	192	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1815829	162	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1563881	54	CTG ...	LYA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1101330	51	TTG ...	LMP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
218479	72	TTG ...	LYR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
76988	84	CTG ...	LYA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1813144	171	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
842380	90	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1817563	174	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1068048	30	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1814141	174	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1815546	159	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
913767	66	GTG ...	VQV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
77108	174	GTG ...	VDK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1813306	201	GTG ...	VSD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1566059	60	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1812906	81	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1099472	48	ATG ...	MPL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1097742	57	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E

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