Transcript 769715

Transcript

ID CARD

MetamORF ID

769715

ENSMUST00000144318

Name

Top2a-205

Strand

Biotype

processed_transcript

Start-end positions

99003625-99006522

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:21973

Aliases

ENSMUSG00000020914,
MGI:98790, NCBI:21973, OFF:Top2a,
Top-2, Top2a

Chr 11

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
770412	111	CTG ...	LAS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
1291535	120	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1285468	60	AGG ...	REL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1291646	48	ATA ...	IIS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1284830	111	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1079396	180	CTG ...	LIN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E
1286565	45	ATA ...	IPY ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1080172	114	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E, v6-5
1079918	276	TTG ...	LFP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
1292959	60	AGG ...	RLH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1078747	69	ATG ...	MVL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
1284376	93	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1127193	63	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
773189	126	TTG ...	LAQ ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
1037870	288	TTG ...	LAR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
1285669	72	ATT ...	ILD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1125216	48	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1124639	45	ATG ...	MVH ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
1292053	195	ATA ...	IIP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1126498	45	ATG ...	MMT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, R1E, v6-5
769714	93	GTG ...	VIN ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
1285218	135	ATT ...	IIN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1288061	90	ATT ...	ING ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1127808	42	TTG ...	LKS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
1037559	66	GTG ...	VLR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, v6-5
1078856	69	CTG ...	LDS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E, v6-5
1290124	174	AAG ...	KTP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1289253	30	ATA ...	IGN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1079997	183	GTG ...	VLI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, R1E
774155	57	CTG ...	LHG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
1123304	42	ATG ...	MTT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, v6-5
1125438	30	GTG ...	VLS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
774379	96	TTG ...	LNL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
1078626	111	GTG ...	VGS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
1079157	279	TTG ...	LLF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
648986	69	ATG ...	MIT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
1291071	36	ATT ...	IWR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1286945	87	AGG ...	RTQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1079024	147	CTG ...	LMM ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
1128087	54	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	v6-5

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