Transcript 756968

Transcript

ID CARD

MetamORF ID

756968

ENSMUST00000097541

Name

Fam129a-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

151571452-151719342

CDS Start-stop positions

151571530-151715708

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:63913

Aliases

AI256368,
AU019833, ENSMUSG00000026483, Fam129a,
MGI:2137237, NCBI:63913, Niban,
Niban1, OFF:Niban1

Chr 1

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
804592	132	CTG ...	LWQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Neutrophil
772911	78	ATG ...	MAT ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
760785	57	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
778137	114	CTG ...	LGI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
798699	126	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
476992	30	CTG ...	LWK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
470521	33	TTG ...	LLW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
778717	195	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell
803893	114	GTG ...	VQH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell
1469380	42	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
467421	51	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
783365	78	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
1045592	99	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
803329	192	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
775939	36	TTG ...	LSV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
769785	168	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, R1E
785738	264	GTG ...	VTV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
756967	57	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
469057	54	TTG ...	LRT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1046366	111	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
771579	132	ATG ...	MRW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	B_cell, Glioma, Liver, MEF, MESC
770495	84	GTG ...	VED ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, R1E
776046	36	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
478928	36	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative CDS NMD sORF	BMDC
769921	75	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
466577	51	ATG ...	MIT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
1708645	54	ATG ...	MRN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
831543	87	CTG ...	LVE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, R1E
783677	48	TTG ...	LKM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
1044240	48	ATG ...	MIL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
1462995	78	ATG ...	MTE ...	Ribo-seq	ATG		1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
1058471	48	ATG ...	MNS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
824948	114	GTG ...	VME ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
772217	117	CTG ...	LVM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
1449844	63	CTG ...	LCF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
775331	60	ATG ...	MRP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
1446582	33	GTG ...	VKS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
470260	42	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
788167	78	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell
769368	123	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell
822608	108	GTG ...	VQS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
769908	99	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
1679570	63	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
780093	138	GTG ...	VYL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Neutrophil
800818	72	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
478551	42	ATG ...	MIS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	B_cell, Glioma, Liver, MEF, MESC
783821	36	ATG ...	MCA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
790881	162	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Neutrophil
794303	165	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, R1E
774490	195	GTG ...	VAQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
788876	42	TTG ...	LLK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell

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