Transcript 75352 | MetamORF

Transcript

ID CARD

MetamORF ID

75352

ENSMUST00000207476

Name

Irf3-205

Strand

Biotype

retained_intron

Start-end positions

44997680-45002390

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:54131

Aliases

C920001K05Rik,
ENSMUSG00000003184, IRF-3, Irf3,
MGI:1859179, NCBI:54131, OFF:Irf3

Chr 7

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1812830	33	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1815073	69	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1816788	201	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
594291	168	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
221678	36	GTG ...	VFD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
4542	75	CTG ...	LAG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
227941	165	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
597963	279	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
593496	222	GTG ...	VKE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
597346	210	GTG ...	VGQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
75351	159	CTG ...	LLE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
4259	120	CTG ...	LAG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
597520	171	CTG ...	LWQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
593990	195	GTG ...	VTD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
596928	237	CTG ...	LTD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
592532	96	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
1814361	114	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
589748	189	CTG ...	LGN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
589229	258	CTG ...	LPD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
591345	177	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
226083	108	CTG ...	LGE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E

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