Transcript 736 | MetamORF

Transcript

ID CARD

MetamORF ID

736

ENSMUST00000141013

Name

Tmem59-205

Strand

Biotype

retained_intron

Start-end positions

107178667-107190890

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:56374

Aliases

1110001M20Rik,
3110046P06Rik, AI256529, D4Ertd20e,
ENSMUSG00000028618, MGI:1929278, MTDCF1,
NCBI:56374, OFF:Tmem59, ORF18,
Tmem59

Chr 4

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
156898	57	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
159190	66	GTG ...	VDD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E
152812	87	CTG ...	LFS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E
158856	48	ATG ...	MPE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
157738	135	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
159956	144	CTG ...	LTL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
153928	36	TTG ...	LAA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
735	33	CTG ...	LEC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor
156849	84	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
161053	78	TTG ...	LNF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
1017142	144	TTG ...	LQL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1556318	132	CTG ...	LKE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1015580	135	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
156256	84	TTG ...	LFV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
160323	111	TTG ...	LVI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1015421	240	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
147137	174	CTG ...	LMP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
147710	48	ATG ...	MLV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
146733	60	CTG ...	LMS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
153285	138	CTG ...	LVR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
157291	51	TTG ...	LTR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
157087	69	CTG ...	LQR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E

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