Transcript 73187 | MetamORF

Transcript

ID CARD

MetamORF ID

73187

ENSMUST00000210394

Name

Nucb1-205

Strand

Biotype

retained_intron

Start-end positions

45495053-45503247

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:18220

Aliases

B230337F23Rik,
C77483, Calnuc, ENSMUSG00000030824,
MGI:97388, MTEST82, NCBI:18220,
Nucb, Nucb1, OFF:Nucb1

Chr 7

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
228799	69	GTG ...	VGG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, v6-5
595499	111	CTG ...	LFF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
217978	117	ATG ...	MRG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, NSC, v6-5
73186	90	TTG ...	LDG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Testis
74072	204	TTG ...	LPL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, Testis, v6-5
590132	240	ATG ...	MQV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Neutrophil
75691	111	TTG ...	LKE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Testis
75960	81	TTG ...	LDP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Testis
212491	153	ATG ...	MKS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Neutrophil, NSC, v6-5
76137	150	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
74017	102	GTG ...	VWE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Testis
1068803	279	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
74343	213	GTG ...	VTL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, Testis, v6-5
211547	234	GTG ...	VSK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil
214261	39	ATG ...	MSK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
224327	168	ATG ...	MTL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Neutrophil, NSC, v6-5
223489	162	CTG ...	LHT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, Neutrophil, NSC, v6-5

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