Transcript 72800 | MetamORF

Transcript

ID CARD

MetamORF ID

72800

ENSMUST00000125136

Name

Trim28-204

Strand

Biotype

retained_intron

Start-end positions

13029091-13030103

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:21849

Aliases

AA408787,
ENSMUSG00000005566, KAP-1, KRIP-1,
MGI:109274, MommeD9, NCBI:21849,
OFF:Trim28, Tif1b, Tif1beta,
Trim28

Chr 7

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
73043	180	GTG ...	VVA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell, Testis
72799	177	GTG ...	VAP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Spleen_B_cell, Testis
76069	252	CTG ...	LTE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Spleen_B_cell, Testis
1253253	135	ATC ...	ILD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
532489	102	TTG ...	LSV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
594805	63	CTG ...	LTA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
72103	30	CTG ...	LEA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
589733	57	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
73007	84	CTG ...	LVM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
76429	264	GTG ...	VLM ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell, Testis
76620	48	CTG ...	LDC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
76439	132	CTG ...	LDD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell, Testis
74666	186	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell, Testis
1250741	114	ATC ...	ICR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
595587	51	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1254806	60	AAG ...	KLL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
532223	108	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
533877	93	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
534245	96	GTG ...	VVL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
74364	261	TTG ...	LMP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell, Testis
531829	90	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
1256597	270	AAG ...	KPV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
72673	90	TTG ...	LNA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
1251642	69	AAG ...	KRQ ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
531350	87	CTG ...	LQQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell

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