Transcript 727684

Transcript

ID CARD

MetamORF ID

727684

ENSMUST00000124624

Name

Cd44-209

Strand

Biotype

retained_intron

Start-end positions

102851893-102901458

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:12505

Aliases

AU023126,
AW121933, AW146109, Cd44,
ENSMUSG00000005087, HERMES, Ly-24,
MGI:88338, NCBI:12505, OFF:Cd44,
Pgp-1

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
731803	132	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
727785	36	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
15979	63	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
14862	75	GTG ...	VMV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
412424	39	TTG ...	LPF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
15074	84	TTG ...	LST ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
735219	51	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
727791	168	TTG ...	LNV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
733242	102	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
15238	72	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
108103	60	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
15926	69	GTG ...	VAH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
730899	69	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
15779	168	ATG ...	MTM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
496469	162	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
740096	60	CTG ...	LCS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
15615	57	TTG ...	LGT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
15359	48	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
730983	108	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
727683	30	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
15365	96	ATG ...	MWR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
15800	84	ATG ...	MAA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
15361	105	GTG ...	VYS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
735683	63	CTG ...	LKK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
15386	72	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3

Export data