Transcript 725275

Transcript

ID CARD

MetamORF ID

725275

ENSMUST00000176653

Name

Kdm2a-212

Strand

Biotype

protein_coding

Start-end positions

4324906-4334001

CDS Start-stop positions

-4333801

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:225876

Aliases

100043628,
5530401A10Rik, AA589516, AW536790,
Cxxc8, ENSMUSG00000054611, Fbl11,
Fbl7, Fbxl11, Gm4560,
Jhdm1, Jhdm1a, Kdm2a,
lalina, MGI:1354736, NCBI:225876,
OFF:Kdm2a

Chr 19

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
487341	33	GTG ...	VFS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF	MEF, NSC, v6-5
723578	132	GTG ...	VQE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
720143	81	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
403114	45	GTG ...	VCK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	MEF
718469	99	ATG ...	MWS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
718886	123	ATG ...	MQS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF, v6-5
490266	114	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
401185	60	ATG ...	MKR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
405687	42	TTG ...	LKR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
725274	213	CTG ...	LPY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, B_cell
722193	114	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
488912	111	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
724525	33	CTG ...	LCP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
719365	96	TTG ...	LCQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	MEF
718857	90	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
406192	30	GTG ...	VES ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	MEF

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