Transcript 72309 | MetamORF

Transcript

ID CARD

MetamORF ID

72309

ENSMUST00000103079

Name

Cttn-202

Strand

Biotype

protein_coding

Start-end positions

144435735-144471009

CDS Start-stop positions

144436965-144463998

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:13043

Aliases

1110020L01Rik,
Cttn, Ems1, ENSMUSG00000031078,
MGI:99695, NCBI:13043, OFF:Cttn

Chr 7

ORFs

78 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
219297	66	CTG ...	LCP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
220174	117	GTG ...	VAN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
231765	159	GTG ...	VDP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, NSC
1259130	237	ATA ...	IRL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1259535	168	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
230634	129	TTG ...	LFQ ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
232427	36	GTG ...	VSR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, v6-5
75261	48	ATG ...	MPS ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14, Liver, MEF, NSC, R1E, Testis, v6-5
594407	120	TTG ...	LVA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
595507	108	ATG ...	MQL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
233434	138	GTG ...	VLL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
214617	69	ATG ...	MLC ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1099089	75	CTG ...	LWA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
234243	162	CTG ...	LVD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, NSC
599040	75	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
234603	66	ATG ...	MLC ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
233225	297	GTG ...	VHA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1322520	102	TTG ...	LII ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	E14, MEF, NSC
914681	114	ATT ...	IPL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
415868	138	ATT ...	IDH ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14
596053	63	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
219442	45	ATG ...	MEE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC
211150	48	ATG ...	MME ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC
234195	156	TTG ...	LLV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
72308	30	TTG ...	LDS ...	Ribo-seq	TTG	strong	11	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14, Liver, MEF, NSC, R1E, Testis, v6-5
215963	108	ATG ...	MGL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
230588	129	TTG ...	LSS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, v6-5
230529	162	ATG ...	MAG ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, v6-5
217570	114	ATG ...	MSS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC
230983	231	ATG ...	MSS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E
4586	45	ATG ...	MAG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
229777	60	CTG ...	LWA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
602437	66	ATG ...	MPP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
233822	282	CTG ...	LTW ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
595674	42	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
232553	45	ATG ...	MME ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
601924	36	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1254893	87	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
233573	135	ATG ...	MSL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
235026	147	GTG ...	VWS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, v6-5
232809	93	ATG ...	MGL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
235253	63	GTG ...	VLW ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
595666	78	CTG ...	LQA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, v6-5
234906	162	TTG ...	LTT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1101625	66	TTG ...	LSI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, v6-5
1259025	204	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
4593	30	GTG ...	VWS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
213928	78	GTG ...	VLW ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
601518	93	TTG ...	LNT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
601059	75	CTG ...	LQA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
1259642	195	AAG ...	KPE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
234329	42	ATG ...	MEE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
416407	102	ATT ...	IPW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
226717	33	ATG ...	MTG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, NSC
230346	87	TTG ...	LTR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1259348	231	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
4244	78	CTG ...	LLT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1260338	231	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
233108	102	GTG ...	VAN ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
230235	132	TTG ...	LLF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
416223	81	ATA ...	IFH ...	Ribo-seq	ATA		2	sORFs_org_Mouse	sORF Upstream	C2C12, E14
230381	105	TTG ...	LVA ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
978010	198	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
233021	135	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1097930	102	TTG ...	LTR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
232126	108	ATG ...	MST ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E, v6-5
230624	30	ATG ...	MTG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
1518266	45	GTG ...	VES ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
234605	33	CTG ...	LMT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1251794	96	ATC ...	IAD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	E14
1690503	111	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
592619	33	GTG ...	VAN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
235057	147	ATG ...	MPH ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
233055	174	GTG ...	VPW ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
232302	51	TTG ...	LSI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
1254205	45	AGG ...	RQV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
234160	63	CTG ...	LCP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
228234	36	CTG ...	LMT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5

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