Transcript 714 | MetamORF

Transcript

ID CARD

MetamORF ID

714

ENSMUST00000106255

Name

Cap1-202

Strand

Biotype

protein_coding

Start-end positions

122859047-122886044

CDS Start-stop positions

122860134-122872443

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:12331

Aliases

Cap1,
ENSMUSG00000028656, MGI:88262, NCBI:12331,
OFF:Cap1

Chr 4

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
61119	42	TTG ...	LHR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell, Testis
60664	99	ATG ...	MSS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell, Testis
1539	42	ATG ...	MWI ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, Skin_tumor, Spleen_B_cell
60266	78	CTG ...	LVL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell, Testis
59894	72	CTG ...	LTT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell, Testis
514542	210	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
549879	30	TTG ...	LMT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
162749	150	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
826947	120	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
161385	60	GTG ...	VKA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Spleen_B_cell
513643	207	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
61165	63	GTG ...	VSS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell, Testis
513823	114	GTG ...	VAP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
60533	90	ATG ...	MTR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell, Testis
827528	114	GTG ...	VPR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
511671	51	ATG ...	MCK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
60049	162	GTG ...	VDC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell, Testis
510117	102	ATG ...	MRA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
56772	33	CTG ...	LWI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Testis
868702	51	GTG ...	VST ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
155812	129	GTG ...	VVQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
160415	45	CTG ...	LSV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
545225	99	GTG ...	VRA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
512750	66	CTG ...	LGG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
60051	84	ATG ...	MET ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell, Testis
164977	66	CTG ...	LSV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
59608	63	CTG ...	LHH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell, Testis
60037	45	CTG ...	LAW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Testis
515426	69	CTG ...	LGG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
1276	42	TTG ...	LAW ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Skin_tumor, Spleen_B_cell
60407	96	TTG ...	LFF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell, Testis
828177	102	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
510041	96	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
713	69	ATG ...	MDG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, Skin_tumor, Spleen_B_cell
163530	69	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
975	93	CTG ...	LGQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, Skin_tumor, Spleen_B_cell
164480	123	CTG ...	LHL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
823722	111	GTG ...	VPR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
827	39	CTG ...	LPC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Skin_tumor, Spleen_B_cell
166279	156	GTG ...	VVQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
822167	117	GTG ...	VGV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
148230	45	CTG ...	LIC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Spleen_B_cell
56495	36	ATG ...	MSS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell, Testis
162713	141	GTG ...	VAP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
166141	141	CTG ...	LWD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
145956	48	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
60583	90	GTG ...	VDM ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell, Testis
151399	39	GTG ...	VKA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
60351	108	ATG ...	MDS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, Testis

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