Transcript 71353 | MetamORF

Transcript

ID CARD

MetamORF ID

71353

ENSMUST00000057578

Name

Trnt1-201

Strand

Biotype

protein_coding

Start-end positions

106769166-106782474

CDS Start-stop positions

106769856-106779434

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:70047

Aliases

2410043H24Rik,
2610044E04Rik, 9830143O18Rik, AA408384,
C76540, CGI-47, ENSMUSG00000013736,
MGI:1917297, mt-Trat, NCBI:70047,
OFF:Trnt1, Trnt1

Chr 6

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1093588	48	ATG ...	MAE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
578597	75	TTG ...	LGP ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
2879	36	GTG ...	VEE ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
71352	75	CTG ...	LCS ...	Ribo-seq	CTG		16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
205715	69	GTG ...	VIG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, NSC, v6-5
525869	33	ATG ...	MLP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1670176	33	GTG ...	VVT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
204992	33	TTG ...	LGR ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
527939	39	TTG ...	LST ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
70886	66	ATG ...	MCD ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, v6-5
1094693	114	ATG ...	MTS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
200639	57	TTG ...	LSP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
1314580	36	GTG ...	VVC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
210518	114	GTG ...	VPS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
583307	30	ATG ...	MQL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1669134	54	TTG ...	LQK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1669301	30	CTG ...	LEY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1249958	45	ACG ...	TFL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	E14
528641	42	CTG ...	LTG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
582383	45	ATG ...	MPK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
525629	93	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1093947	51	GTG ...	VNS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
576846	120	GTG ...	VDM ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1094254	51	ATG ...	MVF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
528130	36	TTG ...	LML ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1094493	30	ATG ...	MLK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
528104	57	TTG ...	LKL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
71823	87	TTG ...	LAT ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5

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