Transcript 7119 | MetamORF

Transcript

ID CARD

MetamORF ID

7119

ENSMUST00000139375

Name

Maged1-205

Strand

Biotype

retained_intron

Start-end positions

94535476-94537835

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:94275

Aliases

2810433C11Rik,
5430405L04Rik, Dlixin, Dlxin-1,
Dlxin1, DXBwg1492e, ENSMUSG00000025151,
MAGE-D1, Maged1, MGI:1930187,
NCBI:94275, NRAGE, OFF:Maged1

Chr X

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89485	138	CTG ...	LDY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
276871	159	CTG ...	LHS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
280423	111	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
1278378	198	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1278299	105	AGG ...	RFP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
281462	186	TTG ...	LEI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14
278661	48	CTG ...	LCL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
1277241	210	ATT ...	IEF ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1277808	180	ATC ...	ILG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
88975	33	CTG ...	LDC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
282268	114	ATG ...	MLL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
278593	48	ATG ...	MSS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
277987	141	CTG ...	LQM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
89156	66	GTG ...	VRH ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
1278394	252	ATT ...	IGD ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	E14
89471	195	CTG ...	LTW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
88876	198	CTG ...	LLT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
277044	201	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain
88603	123	GTG ...	VPN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
278898	54	ATG ...	MRL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
282669	81	GTG ...	VVL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14
88892	237	GTG ...	VSG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
283003	156	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
281060	84	CTG ...	LKR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
275755	132	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
89499	48	CTG ...	LGI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E
282788	132	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
1277271	174	AGG ...	RRF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1279319	30	AAG ...	KTH ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
88803	42	CTG ...	LRK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E
277272	123	ATG ...	MLW ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
7118	54	GTG ...	VIL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E, Skin_tumor
284040	168	GTG ...	VTG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
280131	90	TTG ...	LAP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
276778	54	CTG ...	LSM ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
279538	42	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
278786	60	TTG ...	LEM ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain
276800	102	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
279484	108	CTG ...	LQL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
275646	102	CTG ...	LRQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
283025	135	ATG ...	MKP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
276909	75	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
281796	42	CTG ...	LVP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
1276946	81	ATA ...	IDE ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Intronic sORF	E14

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