Transcript 7088 | MetamORF

Transcript

ID CARD

MetamORF ID

7088

ENSMUST00000052839

Name

Efnb1-201

Strand

Biotype

protein_coding

Start-end positions

99136130-99148991

CDS Start-stop positions

99136886-99147527

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:13641

Aliases

Cek5-L,
EFL-3, Efnb1, Elk-L,
ENSMUSG00000031217, Epl2, Eplg2,
LERK-2, Lerk2, MGI:102708,
NCBI:13641, OFF:Efnb1, Stra1

Chr X

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1574405	210	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1573612	93	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
89026	174	CTG ...	LSW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Testis
1573216	66	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1278876	93	ATA ...	ILR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1278830	297	TTG ...	LQS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1573466	222	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1280009	33	ACG ...	TGL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1278042	138	CTG ...	LGE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
1574615	195	ATG ...	MYW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
89317	141	GTG ...	VAR ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Testis
1573884	90	GTG ...	VAC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1573784	135	CTG ...	LCH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
89560	57	GTG ...	VGR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	E14, Testis
417944	51	GTG ...	VQI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, MEF
1280005	30	ATG ...	MRG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC
1574218	60	GTG ...	VPA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1573161	87	GTG ...	VVQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1574982	66	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1575271	153	GTG ...	VSH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1754155	123	CTG ...	LQT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1573439	102	TTG ...	LAQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1574729	111	TTG ...	LQQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
7087	48	GTG ...	VSH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
1573229	204	TTG ...	LIP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

Export data