Transcript 706058

Transcript

ID CARD

MetamORF ID

706058

ENSMUST00000154232

Name

Brd2-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

34112030-34120411

CDS Start-stop positions

34116317-34118631

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:14312

Aliases

AW228947,
Brd2, D17H6S113E, ENSMUSG00000024335,
Frg-1, Fsrg-1, Fsrg1,
MGI:99495, mKIAA4005, Nat,
NCBI:14312, OFF:Brd2, Ring3,
Rnf3

Chr 17

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
704070	132	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
386189	297	CTG ...	LQM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
1770341	60	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
37410	243	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
387620	69	TTG ...	LQD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
386082	126	GTG ...	VGK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
1769849	63	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
36023	54	ATG ...	MDF ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	NMD sORF Upstream	E14, MEF
956119	33	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1625901	111	CTG ...	LWL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
1152385	99	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
956663	66	ATC ...	IRL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	NMD sORF Upstream	MEF
38431	51	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF Upstream	Brain, Liver
796338	246	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	B_cell, E14, Liver, MEF
38196	195	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	v6-5
705166	66	CTG ...	LQR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
382338	246	GTG ...	VQA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
37386	273	CTG ...	LYE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, v6-5
479535	138	GTG ...	VQS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	v6-5
38322	276	CTG ...	LLY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, v6-5
956787	129	AGG ...	RIA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	E14
1357693	138	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
36934	156	TTG ...	LRG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
955304	102	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	v6-5
38513	192	GTG ...	VSN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF
795821	237	CTG ...	LSQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	B_cell, E14, Liver, MEF
36683	192	CTG ...	LSP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	NMD sORF Upstream	E14, MEF, v6-5
36807	186	CTG ...	LYT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1190068	201	ATT ...	IFL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
707699	87	TTG ...	LKT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	MEF, v6-5
36261	54	ATG ...	MLG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	NMD sORF Upstream	Brain, E14, Liver
1359906	153	CTG ...	LKY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
384610	99	TTG ...	LEK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
706057	45	CTG ...	LSG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, MEF, v6-5
798007	243	CTG ...	LRA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	v6-5
38298	219	GTG ...	VPA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
383245	291	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
1152336	66	CTG ...	LPQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF, v6-5
1358297	198	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1359136	213	GTG ...	VPI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
36122	39	GTG ...	VRG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF Upstream	E14, Liver, NSC
38566	60	TTG ...	LEM ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	NMD sORF Upstream	E14, MEF, Neutrophil
702373	51	CTG ...	LWE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
381389	96	GTG ...	VPF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain, v6-5
388534	72	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
1358626	195	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
37461	201	GTG ...	VSH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
36574	285	TTG ...	LTT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
388512	117	TTG ...	LAR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain, v6-5
38459	165	CTG ...	LPE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	E14, MEF
482736	147	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	v6-5
38257	120	CTG ...	LEK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, MEF, v6-5
381208	105	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
37305	222	CTG ...	LAP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF
702208	111	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
388211	201	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
479809	138	CTG ...	LEG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, v6-5
379241	198	TTG ...	LQA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
704227	54	ATG ...	MAI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
382949	75	CTG ...	LRH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
1359431	186	CTG ...	LCR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
36369	276	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
1152341	102	GTG ...	VAV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, v6-5
1357612	105	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1150580	96	GTG ...	VSR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, v6-5
955797	99	TTG ...	LKH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14

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