Transcript 7050 | MetamORF

Transcript

ID CARD

MetamORF ID

7050

ENSMUST00000135027

Name

Msn-202

Strand

Biotype

processed_transcript

Start-end positions

96096097-96151959

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:17698

Aliases

C78546,
ENSMUSG00000031207, MGI:97167, Msn,
NCBI:17698, OFF:Msn

Chr X

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
443756	66	ATG ...	MQS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
7205	132	GTG ...	VVK ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, NSC, Skin_tumor
630365	108	TTG ...	LLL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, NSC
926669	57	AAG ...	KFG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
633766	75	CTG ...	LEF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC
7239	63	TTG ...	LVL ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC, Skin_tumor
927836	171	ATT ...	IQP ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
417964	78	GTG ...	VSP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, C2C12, MEF, NSC
974997	111	AGG ...	REV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
7107	114	TTG ...	LCC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, NSC, Skin_tumor
444585	81	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1280999	216	ATC ...	ISV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
443935	183	CTG ...	LEF ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
441030	84	GTG ...	VCV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC
1526299	165	TTG ...	LNV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
927531	63	ATT ...	IQP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	MEF
7092	54	CTG ...	LKL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Skin_tumor
7470	144	CTG ...	LFD ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
7265	114	TTG ...	LRE ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, NSC, Skin_tumor
417999	63	ATG ...	MQS ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, C2C12, MEF, NSC
444701	210	GTG ...	VRV ...	Ribo-seq	GTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
927261	36	CTG ...	LFD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
282401	45	TTG ...	LVC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC
417988	84	CTG ...	LRA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, C2C12, MEF, Neutrophil, NSC
89132	33	CTG ...	LPL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E
441732	48	TTG ...	LPF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC
7192	90	CTG ...	LQY ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, NSC, Skin_tumor
631377	102	GTG ...	VRV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, NSC
927919	150	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
927324	255	GTG ...	VGP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
7049	129	GTG ...	VKT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, NSC, R1E, Skin_tumor

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