Transcript 7024 | MetamORF

Transcript

ID CARD

MetamORF ID

7024

ENSMUST00000033313

Name

Atp6ap2-201

Strand

Biotype

protein_coding

Start-end positions

12587801-12617049

CDS Start-stop positions

12587896-12615873

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:70495

Aliases

(P)RR,
5730403E06Rik, APT6M8-9, Atp6ap2,
Atp6ip2, ATP6M8-9, ENSMUSG00000031007,
M8-9, MGI:1917745, NCBI:70495,
OFF:Atp6ap2, PRR

Chr X

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
926989	66	ATG ...	MGK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1693765	48	CTG ...	LDM ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream sORF	MEF
7173	54	TTG ...	LFS ...	Ribo-seq	TTG	weak	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
926771	69	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
7364	75	GTG ...	VDY ...	Ribo-seq	GTG	strong	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
7345	42	ATG ...	MEI ...	Ribo-seq	ATG	strong	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Skin_tumor, Spleen_B_cell, v6-5
278437	30	CTG ...	LDM ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
927886	108	ATG ...	MGK ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, v6-5
7257	81	TTG ...	LAY ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
927598	33	ATC ...	ILD ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1278312	33	ATC ...	IPC ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
278218	39	ATG ...	MTC ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, NSC, v6-5
926182	117	AAG ...	KIA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
7023	57	CTG ...	LLF ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
285237	120	TTG ...	LGS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, v6-5
285977	81	ATG ...	MLL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, v6-5
277455	45	ATG ...	MLD ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Brain, Glioma, Liver, MEF, MESC
926184	123	ATT ...	IHP ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1078039	126	ATG ...	MNL ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC, Neutrophil
441288	45	TTG ...	LQM ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1480840	84	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
928010	69	AAG ...	KTC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
928390	165	ATT ...	IHP ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
928117	69	ATA ...	INW ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
926503	264	ATC ...	ISA ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
1277715	60	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
926618	48	ATA ...	IIW ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1277445	39	ATA ...	IWI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
282005	114	CTG ...	LQC ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell
927297	54	ATA ...	INW ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
927975	96	CTG ...	LNS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
1693689	42	ATG ...	MLI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
443357	60	TTG ...	LHI ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
281621	48	TTG ...	LPW ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E, Spleen_B_cell
927477	42	ATT ...	IRH ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
927183	108	AGG ...	RVC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
926877	54	ATA ...	ISI ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
926935	66	ATA ...	ITL ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
277624	78	TTG ...	LGS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF
928324	102	AAG ...	KTL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
275282	30	CTG ...	LSN ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, NSC, R1E, Spleen_B_cell

Export data