Transcript 702360

Transcript

ID CARD

MetamORF ID

702360

ENSMUST00000172610

Name

Cmtr1-209

Strand

Biotype

retained_intron

Start-end positions

29685795-29690077

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:74157

Aliases

1300018I05Rik,
AI451264, Cmtr1, ENSMUSG00000024019,
Ftsjd2, MGI:1921407, MTr1,
NCBI:74157, OFF:Cmtr1

Chr 17

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
480661	84	TTG ...	LLM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
706791	93	ATG ...	MEM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF
37686	147	GTG ...	VLW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil, R1E
37087	222	CTG ...	LLK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E, v6-5
37369	180	GTG ...	VCA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E
385185	57	ATG ...	MHF ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, R1E
384947	99	TTG ...	LTF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1191115	228	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
703856	102	GTG ...	VGS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF
1005117	111	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
707962	81	CTG ...	LMC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
796725	105	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
706646	87	ATG ...	MEI ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF
1004224	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
37970	144	CTG ...	LWR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil, R1E
387240	78	ATG ...	MCV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
481316	153	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
388748	72	GTG ...	VQA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1005266	81	CTG ...	LCQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
36622	219	CTG ...	LKE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E, v6-5
1004179	84	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
795692	42	TTG ...	LSW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E
706688	108	GTG ...	VRV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
1004799	129	GTG ...	VEG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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