Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

7015

ID

ENSMUST00000153851

Name

Ddx3x-205

Strand

+

Biotype

processed_transcript

Start-end positions

13281022-13292022

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

AAA ...

Gene

ID

NCBI:13205

Aliases

D1Pas1-rs2,
Ddx3, Ddx3x, ENSMUSG00000000787,
Fin14, MGI:103064, NCBI:13205,
OFF:Ddx3x


Chr X

ORFs

122 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

276000 81

CTG ...

LGL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver, R1E,
Spleen_B_cell
7357 105

CTG ...

LDL ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
MEF, R1E, Skin_tumor,
Spleen_B_cell
1278959 45

ATA ...

ICL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1280208 33

AGG ...

RPY ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1276828 48

AAG ...

KSS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1279751 123

ATT ...

IRW ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1280157 162

ATG ...

MPL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1276653 168

ACG ...

TWM ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
276956 42

TTG ...

LTC ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, R1E,
Spleen_B_cell
1277872 114

ATA ...

IRR ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
765285 201

CTG ...

LAR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, MEF, R1E
1277777 33

AGG ...

RVW ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
766781 246

ATG ...

MMA ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, R1E
766408 270

TTG ...

LMI ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E
89544 78

TTG ...

LSL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
R1E, Spleen_B_cell
1278495 87

ACG ...

TEA ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
281834 159

CTG ...

LED ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
Liver, R1E, Spleen_B_cell,
v6-5
88459 39

TTG ...

LYQ ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
Liver, Neutrophil, R1E,
Spleen_B_cell
89022 30

GTG ...

VEV ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, Spleen_B_cell
7111 93

TTG ...

LLV ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
R1E, Skin_tumor, Spleen_B_cell
1278857 111

ATT ...

ISY ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
927141 60

ATT ...

IIK ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
765026 192

GTG ...

VEI ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14
417914 48

TTG ...

LLS ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver, Spleen_B_cell
1279419 144

GTG ...

VPA ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
766696 54

ATG ...

MLL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, R1E
1277085 81

ATC ...

ISL ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1076961 168

CTG ...

LAV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, Neutrophil
927242 48

AAG ...

KWW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
927435 45

AAG ...

KEY ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1279912 168

CTG ...

LDI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7398 66

GTG ...

VDM ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E,
Skin_tumor
283680 81

GTG ...

VQK ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
R1E, Spleen_B_cell
7318 129

GTG ...

VII ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Skin_tumor
766314 237

TTG ...

LVA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, R1E
7322 99

ATG ...

MED ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
R1E, Skin_tumor, Spleen_B_cell
765558 51

TTG ...

LAV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
766192 267

ATG ...

MIV ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, R1E
766002 183

GTG ...

VEG ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14
88887 42

ATG ...

MWQ ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, Liver,
R1E, Spleen_B_cell
766421 39

TTG ...

LMA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14
440646 90

ATG ...

MLV ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
Neutrophil, R1E, Spleen_B_cell
279064 60

ATG ...

MMT ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver, R1E,
Spleen_B_cell
277909 30

GTG ...

VIS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
Liver, R1E, Spleen_B_cell
1278611 63

ATA ...

ILA ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7196 93

ATG ...

MHT ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, E14,
R1E, Skin_tumor, Spleen_B_cell
7076 33

GTG ...

VLK ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
R1E, Skin_tumor, Spleen_B_cell
765942 111

TTG ...

LPI ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
764787 234

GTG ...

VAV ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E
89594 39

TTG ...

LEI ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, E14,
R1E, Spleen_B_cell
441366 60

ATG ...

MEG ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    ncRNA
    sORF
E14, R1E, Spleen_B_cell
443468 39

TTG ...

LGG ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, Liver,
Spleen_B_cell
280031 69

TTG ...

LRN ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Liver, R1E,
Spleen_B_cell
443526 147

TTG ...

LWR ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
R1E, Spleen_B_cell
1277335 45

TTG ...

LNK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
628453 36

TTG ...

LLK ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell
7366 153

GTG ...

VVY ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, R1E,
Skin_tumor, Spleen_B_cell
1277973 63

ATA ...

ISQ ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1279636 72

ATC ...

IQS ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
765871 243

ATG ...

MAL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, R1E
277356 93

CTG ...

LEA ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E,
Spleen_B_cell
284529 51

CTG ...

LNS ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, Brain,
E14, Liver, R1E,
Spleen_B_cell
927193 84

AGG ...

RKS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1279110 114

AAG ...

KDL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1278301 51

ATA ...

IGK ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7130 162

GTG ...

VLD ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, R1E,
Skin_tumor, Spleen_B_cell
1277799 33

AAG ...

KRL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1278841 51

AGG ...

RRS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1278303 222

ATA ...

IEV ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1276698 42

AAG ...

KQQ ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
765067 216

GTG ...

VAL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
440606 54

TTG ...

LGL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
R1E, Spleen_B_cell
440697 99

ATG ...

MKD ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
Neutrophil, R1E, Spleen_B_cell
442944 93

GTG ...

VAT ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, MEF, R1E,
Spleen_B_cell, v6-5
628909 60

TTG ...

LCS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
441773 186

GTG ...

VET ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
R1E, Spleen_B_cell, v6-5
1279103 60

ACG ...

TRE ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
88936 78

TTG ...

LDH ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, E14,
R1E, Spleen_B_cell
765389 261

GTG ...

VDG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E
1278621 129

CTG ...

LPS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7226 30

CTG ...

LKL ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
E14, Liver, R1E,
Skin_tumor, Spleen_B_cell
89252 111

ATG ...

MSR ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
Liver, R1E, Spleen_B_cell
7271 165

CTG ...

LVL ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, R1E,
Skin_tumor, Spleen_B_cell
1276676 126

ATT ...

IMG ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1278015 48

AGG ...

RNR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
441022 60

TTG ...

LNT ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
R1E, Spleen_B_cell
442903 36

ATG ...

MLF ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
Liver, R1E, Spleen_B_cell
633428 33

TTG ...

LKQ ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
Liver
280681 57

ATG ...

MTF ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, Liver,
R1E, Spleen_B_cell
1277787 186

ATA ...

IVA ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1276877 33

ATA ...

IWG ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
766505 201

TTG ...

LKE ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
7159 36

GTG ...

VVL ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
Liver, R1E, Skin_tumor,
Spleen_B_cell
7029 39

ATG ...

MVV ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
R1E, Skin_tumor, Spleen_B_cell
7281 135

ATG ...

MTK ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, Liver,
R1E, Skin_tumor, Spleen_B_cell
443497 72

ATG ...

MET ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
E14, Liver, Neutrophil,
R1E, Spleen_B_cell
1279280 45

AAG ...

KRP ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1280617 105

ATA ...

IVE ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7014 75

GTG ...

VPS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
R1E, Skin_tumor, Spleen_B_cell
7405 75

TTG ...

LVL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, Liver,
R1E, Skin_tumor
442826 192

GTG ...

VFV ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
R1E, Spleen_B_cell
1278882 120

ATT ...

IRD ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7222 90

ATG ...

MAV ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
R1E, Skin_tumor, Spleen_B_cell
1278614 36

AAG ...

KPL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
88611 36

CTG ...

LEK ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, E14,
R1E
1280380 96

AAG ...

KDM ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
89756 51

ATG ...

MWQ ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, v6-5
1277111 39

AGG ...

RWP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
765521 210

TTG ...

LAN ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
1280266 174

ATA ...

IFL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7246 66

GTG ...

VIQ ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, E14,
R1E, Skin_tumor, Spleen_B_cell
1279509 171

GTG ...

VPE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1276830 75

AAG ...

KHA ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
442333 66

ATG ...

MDM ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, MEF,
R1E, Spleen_B_cell, v6-5
441752 201

CTG ...

LTL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, R1E,
Spleen_B_cell
926804 48

ATA ...

ITP ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
7125 69

CTG ...

LAP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E,
Skin_tumor
7152 114

GTG ...

VMS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Liver,
R1E, Skin_tumor, Spleen_B_cell
1277729 102

TTG ...

LSQ ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
442682 69

GTG ...

VMD ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
R1E, Spleen_B_cell
766059 228

GTG ...

VEI ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, E14, R1E
1278562 45

AGG ...

RAL ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    ncRNA
    sORF
E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5