Transcript 701483

Transcript

ID CARD

MetamORF ID

701483

ENSMUST00000147076

Name

Rrp1b-205

Strand

Biotype

retained_intron

Start-end positions

32048285-32062856

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:72462

Aliases

2600005C20Rik,
D030064A17, ENSMUSG00000058392, Kiaa0179,
MGI:1919712, mKIAA0179, NCBI:72462,
OFF:Rrp1b, Rrp1b

Chr 17

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
705658	177	CTG ...	LLK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1192196	123	ATG ...	MAR ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1152529	75	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
706552	141	CTG ...	LKK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E
1358305	141	GTG ...	VAF ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1190290	288	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1191193	51	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1358519	30	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1191023	132	AGG ...	RGR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1862090	36	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1192064	45	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1625545	78	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
478494	72	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
481985	51	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1627942	33	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
799385	276	GTG ...	VGI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1359886	168	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1192816	48	AGG ...	RTT ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1190939	69	AAG ...	KYR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1193168	168	CTG ...	LYR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
707181	174	CTG ...	LKR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1190188	39	AAG ...	KAQ ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1047872	138	CTG ...	LFI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1358704	63	TTG ...	LTP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
36485	105	GTG ...	VLK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
384359	72	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
707938	129	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
798530	84	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1191632	84	ACG ...	TAE ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1358662	54	GTG ...	VIR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
1193334	90	AAG ...	KKT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
36519	66	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
703942	108	GTG ...	VKF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E
1191723	225	AAG ...	KPR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
481879	69	GTG ...	VLH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
798069	105	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1191481	189	CTG ...	LTA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1194089	57	AGG ...	RPH ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
36442	102	CTG ...	LKT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1150132	45	CTG ...	LQI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
704770	288	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
701482	42	CTG ...	LQS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1192141	39	ATC ...	IHH ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
706878	54	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
709306	180	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
481090	42	GTG ...	VCW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14

Export data