Transcript 69740 | MetamORF

Transcript

ID CARD

MetamORF ID

69740

ENSMUST00000125207

Name

Pex3-204

Strand

Biotype

processed_transcript

Start-end positions

13531266-13552864

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:56535

Aliases

1700014F15Rik,
2810027F19Rik, 2900010N04Rik, ENSMUSG00000019809,
MGI:1929646, NCBI:56535, OFF:Pex3,
Pex3

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
71660	75	CTG ...	LPT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, Neutrophil, Testis, v6-5
1430264	111	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1429715	78	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
524373	162	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
57459	69	CTG ...	LQN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, v6-5
418117	33	ATG ...	MHL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver
1433040	99	TTG ...	LRV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1588364	60	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
429658	153	TTG ...	LDL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1433567	108	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
85569	57	TTG ...	LPK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
75863	66	CTG ...	LRE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, Neutrophil, Testis, v6-5
62866	108	ATG ...	MDR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
69739	84	CTG ...	LSM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Liver, Neutrophil, Testis, v6-5
611676	33	ATG ...	MRQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
433645	147	TTG ...	LEQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver

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