Transcript 6852 | MetamORF

Transcript

ID CARD

MetamORF ID

6852

ENSMUST00000172298

Name

Rab11a-208

Strand

Biotype

protein_coding

Start-end positions

64715299-64737758

CDS Start-stop positions

64716849-64737623

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:53869

Aliases

ENSMUSG00000004771,
MGI:1858202, NCBI:53869, OFF:Rab11a,
Rab11a

Chr 9

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6856	135	ATG ...	MLI ...	Ribo-seq	ATG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
265435	30	ATG ...	MAE ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC
6932	93	GTG ...	VIY ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
6851	132	CTG ...	LIV ...	Ribo-seq	CTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
273636	120	TTG ...	LLS ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
272432	246	CTG ...	LKI ...	Ribo-seq	CTG		6	sORFs_org_Mouse	CDS sORF	Brain, MEF, Neutrophil, NSC
257435	51	GTG ...	VPY ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF, Neutrophil, NSC
921592	150	ATC ...	IML ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
924259	51	AAG ...	KQE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
265033	75	TTG ...	LER ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14, Liver, MEF, Neutrophil, NSC
271253	237	TTG ...	LFL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	CDS sORF	Brain, MEF, Neutrophil, NSC
88080	60	ATG ...	MKQ ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
266876	30	ATG ...	MLK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
264052	72	CTG ...	LRT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
922900	111	ATA ...	IRV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
84568	144	CTG ...	LIV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Neutrophil, NSC
265716	39	ATG ...	MSL ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC
265741	36	GTG ...	VLS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
433824	30	TTG ...	LLS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
923886	75	ATG ...	MGH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
86923	81	CTG ...	LVL ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
84206	129	GTG ...	VKM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, NSC, Testis
84749	78	GTG ...	VLE ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
83559	132	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
262496	33	CTG ...	LSE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
86903	102	ATG ...	MWF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Testis
84291	33	ATG ...	MVC ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
85032	99	TTG ...	LSL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
1271328	39	ATT ...	ILQ ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
86549	123	ATG ...	MTC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC, Testis
84372	159	TTG ...	LFL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, Neutrophil, NSC, Testis
254539	36	ATG ...	MTL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
86217	90	TTG ...	LEI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
86963	39	TTG ...	LQQ ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
417317	30	ATC ...	IWK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
85814	147	ATG ...	MLI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, NSC
87282	108	TTG ...	LWA ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
270855	45	TTG ...	LQR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
83939	87	ATG ...	MFR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, Testis
83290	120	TTG ...	LWA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC

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