Transcript 682209

Transcript

ID CARD

MetamORF ID

682209

ENSMUST00000146327

Name

Pabpc1-203

Strand

Biotype

processed_transcript

Start-end positions

36603496-36608973

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:18458

Aliases

ENSMUSG00000022283,
ePAB, MGI:1349722, NCBI:18458,
OFF:Pabpc1, PABP, Pabp1,
Pabpc1, PabpI, Pabpl1

Chr 15

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1185162	279	ATA ...	IKG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
421386	159	ACG ...	TAV ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
688026	96	TTG ...	LKK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
11547	72	CTG ...	LQG ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
789510	120	GTG ...	VVC ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E
1044664	102	CTG ...	LFH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1184790	258	ATC ...	IMW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
469802	54	GTG ...	VLR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
682208	162	GTG ...	VCA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
1045257	192	TTG ...	LDK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
11677	78	ATG ...	MKM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil
789535	36	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1044232	192	TTG ...	LDT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
789179	45	GTG ...	VRS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
789921	72	ATG ...	MAP ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Neutrophil
1538678	33	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
472356	30	GTG ...	VIH ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
469750	129	GTG ...	VKQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Neutrophil
11377	81	GTG ...	VMK ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Neutrophil
790025	54	GTG ...	VLR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
31367	225	CTG ...	LRP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
470547	51	CTG ...	LRV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell

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