Transcript 675298

Transcript

ID CARD

MetamORF ID

675298

ENSMUST00000162825

Name

Fndc3a-205

Strand

Biotype

protein_coding

Start-end positions

72539530-72602962

CDS Start-stop positions

72540167-

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:319448

Aliases

1700094E19Rik,
D14Ertd453e, ENSMUSG00000033487, F730017H24Rik,
Fndc3, Fndc3a, MGI:1196463,
NCBI:319448, OFF:Fndc3a, sys

Chr 14

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
680449	150	TTG ...	LTR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, MEF
1614558	90	CTG ...	LTS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	MEF
676384	117	CTG ...	LQI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
676845	69	CTG ...	LEL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	3T3
676869	45	ATG ...	MGY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	3T3
678981	78	CTG ...	LEL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	3T3
946189	99	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	BMDC
946874	159	ATG ...	MCL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
1614369	45	ATG ...	MKD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
947204	108	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	BMDC
677526	69	GTG ...	VGR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	3T3, NSC, v6-5
1710599	30	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
946295	75	AAG ...	KLW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
681164	207	GTG ...	VGT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, MEF
946239	54	AAG ...	KKL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
1710488	75	TTG ...	LDH ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	MEF
680483	210	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
947243	207	ATG ...	MLF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
1140895	57	CTG ...	LCD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	v6-5
945534	60	AAG ...	KMK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
947314	129	AAG ...	KMK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
1612275	81	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
676350	57	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
680502	192	CTG ...	LQE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, MEF
680282	171	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
676889	90	GTG ...	VYS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, v6-5
1709467	63	GTG ...	VKR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	MEF
678469	39	TTG ...	LKH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
676367	33	GTG ...	VWT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	3T3, MEF
945302	66	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
675297	72	GTG ...	VIL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, MEF
947018	273	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC
1614911	81	ATG ...	MPT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
677362	84	TTG ...	LLI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	3T3
1612467	96	ATG ...	MGL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	MEF
946682	84	ATA ...	IIF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
677204	60	TTG ...	LQL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
945012	141	ATG ...	MPR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	BMDC
678022	63	CTG ...	LAT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	3T3
681318	126	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3

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