Transcript 67273 | MetamORF

Transcript

ID CARD

MetamORF ID

67273

ENSMUST00000111417

Name

Zfp664-201

Strand

Biotype

protein_coding

Start-end positions

124862691-124888630

CDS Start-stop positions

124885544-124886329

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:269704

Aliases

AW060232,
D930038J03Rik, ENSMUSG00000079215, MGI:2442505,
NCBI:269704, OFF:Zfp664, ZFOC1,
Zfp664, Znf664

Chr 5

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
177783	120	CTG ...	LMG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
173167	48	CTG ...	LED ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
167529	84	TTG ...	LRV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
177187	45	CTG ...	LPW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
61945	45	ATG ...	MLL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC, R1E
1241585	162	ACG ...	TLG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	E14
62916	105	GTG ...	VAA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF Upstream	Brain
190465	126	CTG ...	LAD ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, NSC
187947	126	TTG ...	LSD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14
182559	168	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1241815	177	ACG ...	TRS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	E14
1559625	45	GTG ...	VAK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
62989	81	GTG ...	VMR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	Brain
173379	45	CTG ...	LRL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	Brain, R1E
176901	57	CTG ...	LWG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
180202	159	CTG ...	LKP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
179411	87	ATG ...	MQE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	sORF Upstream	Brain, Glioma, Liver, MEF, MESC, R1E
1557698	75	CTG ...	LWK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
175924	66	CTG ...	LDA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Spleen_B_cell
170324	165	CTG ...	LFL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
64965	123	CTG ...	LHG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	Brain
187350	63	CTG ...	LED ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF
172167	42	ATG ...	MSC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, R1E
177535	78	GTG ...	VLW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
66240	45	CTG ...	LLL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	Brain
168592	45	GTG ...	VMS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E
184769	81	TTG ...	LTT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, R1E
63674	33	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	Brain
180415	75	CTG ...	LWR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
62568	42	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	Brain
187543	243	GTG ...	VSP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, R1E
1558308	51	ATG ...	MSV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
184439	99	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, R1E
65673	39	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	Brain
65708	78	ATG ...	MRT ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, Brain, Glioma, Liver, MEF, MESC
65188	36	TTG ...	LLP ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, Brain
169075	93	CTG ...	LTL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Brain, R1E
181684	150	CTG ...	LYI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
170962	84	ATG ...	MLT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC, R1E
169700	117	ATG ...	MGR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	sORF Upstream	Brain, Glioma, Liver, MEF, MESC, R1E
187730	153	CTG ...	LTT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14
67272	147	TTG ...	LER ...	Ribo-seq	TTG		9	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, R1E, Testis
1242304	87	ATA ...	IRE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF Upstream	E14

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