Transcript 67069 | MetamORF

Transcript

ID CARD

MetamORF ID

67069

ENSMUST00000030787

Name

Rheb-201

Strand

Biotype

protein_coding

Start-end positions

24802823-24842624

CDS Start-stop positions

24803664-24842236

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:19744

Aliases

ENSMUSG00000028945,
MGI:97912, NCBI:19744, OFF:Rheb,
Rheb, Rheb1

Chr 5

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
189483	45	CTG ...	LLK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
67185	240	GTG ...	VLS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	CDS sORF	BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
573183	30	CTG ...	LLH ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, NSC, v6-5
1234975	171	ACG ...	TGP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1234261	51	AAG ...	KLS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
903726	180	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
520950	39	ATG ...	MEQ ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, R1E
1241134	30	ATA ...	IRR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
517075	42	TTG ...	LME ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
65186	33	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1238241	222	ACG ...	TLP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF Upstream	E14
64372	30	ATG ...	MVK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
414593	105	TTG ...	LSE ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, E14
906079	96	AAG ...	KKE ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1237958	90	AAG ...	KER ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
564137	33	TTG ...	LEC ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E
67195	291	TTG ...	LSC ...	Ribo-seq	TTG		12	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
561298	144	TTG ...	LGE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
183188	39	CTG ...	LYA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	E14, MEF
1236236	153	ACG ...	TWV ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
574290	51	ATG ...	MVI ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
65844	78	GTG ...	VLC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
168233	36	ATG ...	MNI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, R1E
177671	42	TTG ...	LLK ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, NSC, Spleen_B_cell
175472	39	TTG ...	LKA ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Spleen_B_cell
188516	99	GTG ...	VVG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, v6-5
67068	36	TTG ...	LEI ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
573594	39	TTG ...	LCI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, v6-5
190285	66	ATG ...	MQL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
64330	69	ATG ...	MPR ...	Predicted Ribo-seq	ATG	weak	5	sORFs_org_Mouse Mackowiak2015 Johnstone2016	Alternative sORF Upstream	B_cell, E14, Glioma, Liver, MEF, MESC
1235633	54	AGG ...	RKG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
564015	147	TTG ...	LLG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
187843	99	ATG ...	MKK ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, v6-5
189714	84	CTG ...	LSR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF
1238643	39	ATA ...	IFH ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
569754	42	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14

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