Transcript 66413 | MetamORF

Transcript

ID CARD

MetamORF ID

66413

ENSMUST00000085941

Name

Znhit1-202

Strand

Biotype

protein_coding

Start-end positions

136982190-136986901

CDS Start-stop positions

136982396-136986832

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:70103

Aliases

2700001K05Rik,
ENSMUSG00000059518, MGI:1917353, NCBI:70103,
OFF:Znhit1, ZNFN4A1, Znhit1

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
66550	108	TTG ...	LMM ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
67406	198	TTG ...	LQN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	CDS sORF	Liver, v6-5
66539	99	ATG ...	MQT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF
61814	126	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
66779	105	ATG ...	MMM ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
66412	300	CTG ...	LST ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Overlapping sORF Upstream	Liver, Spleen_B_cell, Testis
67417	156	ATG ...	MTP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF
67014	291	GTG ...	VLR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	Liver, MEF, Spleen_B_cell, Testis
67230	171	ATG ...	MTT ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	C2C12, E14, Glioma, Liver, MEF, MESC
66773	105	GTG ...	VSF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
188866	120	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
190747	132	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
64556	75	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
180132	60	GTG ...	VTT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
66720	102	ATG ...	MMQ ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
66517	63	GTG ...	VTT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, v6-5
67365	147	ATG ...	MPA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
67464	288	TTG ...	LRQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Liver, Spleen_B_cell, Testis
67300	243	CTG ...	LDS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
66533	204	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	CDS sORF	Liver, v6-5
177850	39	GTG ...	VLC ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
179426	36	CTG ...	LCV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
184516	30	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF

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