Transcript 659817

Transcript

ID CARD

MetamORF ID

659817

ENSMUST00000174214

Name

Shmt1-210

Strand

Biotype

protein_coding

Start-end positions

60789144-60807021

CDS Start-stop positions

60789144-

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:20425

Aliases

AI324848,
AI385541, C81125, ENSMUSG00000020534,
MGI:98299, mshmt, mshmt1,
mshmt2, NCBI:20425, OFF:Shmt1,
Shmt, Shmt1

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
450695	48	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF, v6-5
889878	132	ATG ...	MAG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
643900	45	ATG ...	MGE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver
446274	141	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	v6-5
448137	132	GTG ...	VWI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	E14, v6-5
445993	36	CTG ...	LPC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, MEF, v6-5
892346	183	GTG ...	VDV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Liver, v6-5
452429	117	CTG ...	LAK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, v6-5
891880	63	GTG ...	VSM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver
1292100	99	ATG ...	MNW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
890631	42	CTG ...	LPH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Liver, MEF
892329	129	ATG ...	MSW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
891868	102	GTG ...	VHY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver
659816	300	CTG ...	LFP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, B_cell, R1E
655395	93	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Liver
448993	78	CTG ...	LPC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	E14, MEF, R1E, v6-5
447940	69	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	E14, MEF
655341	114	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Liver
892147	210	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
890013	33	CTG ...	LQT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
891123	150	ATG ...	MAG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
890075	111	ATG ...	MSW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver

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