Transcript 649 | MetamORF

Transcript

ID CARD

MetamORF ID

649

ENSMUST00000156263

Name

Rad23b-204

Strand

Biotype

processed_transcript

Start-end positions

55350090-55381116

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:19359

Aliases

0610007D13Rik,
AV001138, ENSMUSG00000028426, HR23B,
MGI:105128, mHR23B, NCBI:19359,
OFF:Rad23b, p58, Rad23b

Chr 4

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59483	33	GTG ...	VLT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Testis
152104	30	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
56725	153	CTG ...	LPP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Testis
413909	84	ATT ...	IES ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	C2C12
59143	264	GTG ...	VTT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell, Testis
59008	96	TTG ...	LKE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Spleen_B_cell, Testis
648	39	CTG ...	LRS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Skin_tumor
146379	213	GTG ...	VTY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
510051	201	CTG ...	LCC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
55677	252	GTG ...	VPA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E, Spleen_B_cell, Testis
1017254	42	TTG ...	LSP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
150723	36	TTG ...	LNL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
977266	150	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
58346	189	GTG ...	VAA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E, Testis
1575734	72	AAG ...	KGK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	MEF

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