Transcript 642622

Transcript

ID CARD

MetamORF ID

642622

ENSMUST00000130269

Name

Map2k3-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

60932066-60952794

CDS Start-stop positions

60932223-60946649

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:26397

Aliases

AW212142,
ENSMUSG00000018932, Map2k3, MAPKK 3,
MEK3, MGI:1346868, MKK3,
MKK3b, NCBI:26397, OFF:Map2k3,
Prkmk3

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9423	51	ATG ...	MLR ...	Ribo-seq	ATG		1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
650669	75	ATG ...	MYG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF
1599938	63	CTG ...	LDV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
650213	33	ATG ...	MSL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC
644349	66	TTG ...	LHK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, Neutrophil, R1E
91575	33	GTG ...	VSK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, R1E, v6-5
648693	75	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF
652069	75	GTG ...	VEE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, R1E
650721	111	TTG ...	LEP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, MEF
1603455	39	ATG ...	MSS ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
648868	87	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
932995	84	ATT ...	ISA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC
648066	78	GTG ...	VVE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, R1E
643162	135	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, v6-5
642018	33	CTG ...	LHG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
1079969	102	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, v6-5
642621	129	CTG ...	LRF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, Neutrophil, R1E
652205	120	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, v6-5
19250	45	ATG ...	MSA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative NMD sORF Upstream	BMDC, Glioma, Liver, MEF, MESC, R1E
650936	117	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, v6-5
642505	66	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
650729	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	BMDC, Glioma, Liver, MEF, MESC
293360	36	ATG ...	MLR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
650424	39	ATG ...	MDL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1079200	51	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
641297	96	CTG ...	LCR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, MEF
1600308	114	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
931720	78	ATC ...	IAC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
658025	51	ATG ...	MLA ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
643164	87	CTG ...	LSP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, MEF

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