Transcript 642454

Transcript

ID CARD

MetamORF ID

642454

ENSMUST00000177669

Name

Pfn1-203

Strand

Biotype

retained_intron

Start-end positions

70652612-70654608

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:18643

Aliases

ENSMUSG00000018293,
MGI:97549, NCBI:18643, OFF:Pfn1,
Pfn, Pfn1

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
930794	57	ATC ...	IFV ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
311105	189	CTG ...	LVG ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
302652	150	CTG ...	LTL ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
19025	150	CTG ...	LPS ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
91556	117	GTG ...	VER ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
930482	33	AAG ...	KTG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
933736	90	AAG ...	KDS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
770845	33	CTG ...	LGR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
932706	159	AAG ...	KFF ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
935477	144	ATC ...	IDS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
452195	219	GTG ...	VPR ...	Ribo-seq	GTG	weak	12	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
770863	105	CTG ...	LQD ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
934142	174	AGG ...	RQR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
773365	42	GTG ...	VIN ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, NSC
419491	57	ACG ...	TPT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
304891	108	CTG ...	LLQ ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
931665	102	ATC ...	IVG ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
8080	120	ATG ...	MFC ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
419301	111	ATC ...	IPA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
8177	78	CTG ...	LSG ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
931415	54	AAG ...	KTF ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
308092	123	GTG ...	VIR ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
935047	81	ATT ...	IYN ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
930431	69	AAG ...	KST ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
419191	30	ACG ...	TGP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
932457	48	AGG ...	RSP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC

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